Research Tools and Services Discovery
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| TensorFlow Cloud Image Indiana University (Indiana U) TensorFlow and Jupyter notebookRelated Jetstream resources:
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| Jupyter Notebook Cloud Image Indiana University (Indiana U) Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.Related Jetstream resources:
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| WQ-MAKER with Genemark and BLAT Cloud Image Indiana University (Indiana U) BLAT and Genemark installed in WQ-MAKER image This image was created by the team at CyVerse and is likely the best MAKER image on Jetstream to use and customize from. This version of MAKER should be multi-node, work queue based, so you should be able to use smaller flavor sizes but more of them. Please refer to the docs linked below. Docs: https://cyverse-wq-maker-tutorial.readthedocs-hosted.com/en/latest/index.htmlRelated Jetstream resources:
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| DEPRECATED - DO NOT USE - PacBio SMRT Analysis Cloud Image Indiana University (Indiana U) SMRT Portal and SMRT AnalysisRelated Jetstream resources:
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| Genomics Toolkit Cloud Image Indiana University (Indiana U) Genome Analysis Tools Look here of complete list of tools -> https://iujetstream.atlassian.net/wiki/spaces/JWT/pages/334397443/Genomics+Toolkit+imageRelated Jetstream resources:
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| Intel Development (CentOS 7) Cloud Image Indiana University (Indiana U) Intel compilers and development environment *REQUIRES a m1.small or larger VM to launch* Based on Centos 7 (7.8), Intel(R) Parallel Studio + GUI + iRODs access added Installation size ~ 18 GBRelated Jetstream resources:
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| SageMath and JupyterLab Cloud Image Indiana University (Indiana U) Image includes SageMath a free open-source mathematics software system licensed under the GPL; JupyterLab JupyterLab the next-generation web-based user interface for Project Jupyter; R and RstudioRelated Jetstream resources:
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| Centos 7 Devel with Anaconda Cloud Image Indiana University (Indiana U) Centos 7 (7.8) Development GUI with Anaconda installed into /opt/anaconda2 Installation size ~ 9.0GB - Requires an m1.small or largerRelated Jetstream resources:
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| Centos 8 (8.4) Development GUI Cloud Image Indiana University (Indiana U) Centos 8 (8.4) Development GUI Installation size ~ 6.6GRelated Jetstream resources:
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| Ubuntu 20.04 Devel and Docker Cloud Image Indiana University (Indiana U) Ubuntu 20.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 4.2 GBRelated Jetstream resources:
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| DEPRECATED - Matlab (R2019a - Ubuntu 16.04) Cloud Image Indiana University (Indiana U) Matlab R2019a install - requires an m1.medium or larger Based on Ubuntu 16.04 LTS Development + GUI support + Docker Installation size ~ 36GB Licensed for: Standard Suite (MATLAB and Simulink) AUTOSAR Blockset Antenna Toolbox Bioinformatics Toolbox Communications Toolbox Control System Toolbox Curve Fitting Toolbox DSP System Toolbox Database Toolbox Datafeed Toolbox Deep Learning Toolbox Econometrics Toolbox Embedded Coder Filter Design HDL Coder Financial Instruments Toolbox Financial Toolbox Fixed-Point Designer Fuzzy Logic Toolbox GPU Coder Global Optimization Toolbox HDL Coder HDL Verifier Image Acquisition Toolbox Image Processing Toolbox Instrument Control Toolbox LTE HDL Toolbox LTE Toolbox MATLAB Coder MATLAB Compiler MATLAB Compiler SDK MATLAB Report Generator Mapping Toolbox Mixed-Signal Blockset Model Predictive Control Toolbox Optimization Toolbox Parallel Computing Toolbox Partial Differential Equation Toolbox Phased Array System Toolbox Powertrain Blockset Predictive Maintenance Toolbox Reinforcement Learning Toolbox Risk Management Toolbox Robotics System Toolbox Robust Control Toolbox Sensor Fusion and Tracking Toolbox SerDes Toolbox Signal Processing Toolbox SimBiology SimEvents Simscape Simscape Driveline Simscape Electrical Simscape Fluids Simscape Multibody Simulink 3D Animation Simulink Check Simulink Code Inspector Simulink Coder Simulink Control Design Simulink Coverage Simulink Design Optimization Simulink Design Verifier Simulink Report Generator Simulink Requirements Simulink Test SoC Blockset Stateflow Statistics and Machine Learning Toolbox Symbolic Math Toolbox System Composer System Identification Toolbox Text Analytics Toolbox Trading Toolbox Vision HDL Toolbox Wavelet ToolboxRelated Jetstream resources:
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| Centos 7 (7.8) Development GUI Cloud Image Indiana University (Indiana U) Centos 7 (7.8) Development GUI Installation size ~ 4.5GBRelated Jetstream resources:
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| Ubuntu 18.04 Devel and Docker Cloud Image Indiana University (Indiana U) Ubuntu 18.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 4.4 GBRelated Jetstream resources:
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| Matlab Minimal Cloud Image Indiana University (Indiana U) Matlab R2018a with Update 6 built on Ubuntu 18.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 15 GB -- requires m1.small or larger Installation folder: /opt/MATLAB/R2018a Products: MATLAB Bioinformatics Toolbox 4.10 Curve Fitting Toolbox 3.5.7 Database Toolbox 8.1 Econometrics Toolbox 5.0 Financial Toolbox 5.11 Global Optimization Toolbox 3.4.4 Image Processing Toolbox 10.2 Neural Network Toolbox 11.1 Optimization Toolbox 8.1 Parallel Computing Toolbox 6.12 Partial Differential Equation Toolbox 3.0 Statistics and Machine Learning Toolbox 11.3 Symbolic Math Toolbox 8.1 SimuLink is NOT installed!Related Jetstream resources:
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| RStudio Desktop - Shiny Server Cloud Image Indiana University (Indiana U) RStudio Desktop 1.3.1073 and R 4.0.3 and Shiny Server v1.5.16.958 built on Ubuntu 20.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added Shiny port is 3838 - /srv/shiny-server is the data directory /opt/r-packages is R package repository Installation size ~ 6.4 GB -- imaged on an m1.smallRelated Jetstream resources:
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| Galaxy Standalone Cloud Image Indiana University (Indiana U) Galaxy Server Standalone Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Runs on port 8080 by default -- access as http://your_ip:8080 Installation size ~ 9.8 GB Requires an m1.medium or larger to run. Information on administering Galaxy may be found here: https://galaxyproject.org/admin/ Galaxy help is here: https://help.galaxyproject.org/ Galaxy dir is /opt/galaxy/galaxyRelated Jetstream resources:
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| Matlab 2021a - Ubuntu 20.04 Cloud Image Indiana University (Indiana U) Matlab R2021a install - requires an m1.medium or larger Based on Ubuntu 20.04 LTS Development + GUI support + Docker Installation size ~ 31GBRelated Jetstream resources:
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| Frog Call Analysis Secure Cloud Image Indiana University (Indiana U) HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.Related Jetstream resources:
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| Bioacoustic Data Collection Cloud Image Indiana University (Indiana U) Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.Related Jetstream resources:
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| bgRAMOSE - Genomics Software Cloud Image Indiana University (Indiana U) This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:
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| REUexercise1 Cloud Image Indiana University (Indiana U) This was an exercise for the REU Jetstream programRelated Jetstream resources:
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| IU-BL-I535-MGMT-DATA Cloud Image Indiana University (Indiana U) This VM has been created for INFO-I 535 Management, Access and Uses of Big Data course conducted in Spring 2021.Related Jetstream resources:
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| PonyLinux Cloud Image Indiana University (Indiana U) This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developerutilities/jetstreamboot.shRelated Jetstream resources:
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| Ubuntu 18.04 for SOMOSPIE Cloud Image Indiana University (Indiana U) Apache Spark, Java, and various Python and R libraries pre-installed for SOMOSPIE (arXiv:1904.07754 [cs.LG]).Related Jetstream resources:
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| Frog Call Analysis Cloud Image Indiana University (Indiana U) HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentationRelated Jetstream resources:
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