Research Tools and Services Discovery
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| B547-I533 Spring 2021 Cloud Image Indiana University (Indiana U) Designed for use with IU SICE B547/I533 Systems and Protocol Security and Information Assurance - Prof. XiaoFeng Wang - Spring 2021 ** Requires an m1_medium instance or larger ** Based on Centos 7 (7.10) Development GUI
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| PonyLinux Cloud Image Indiana University (Indiana U) This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developerutilities/jetstreamboot.shRelated Jetstream resources:
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| MATLAB_2017A_Docker_18.04.4LTS Cloud Image Indiana University (Indiana U) Matlab R2017A Docker Ubuntu 18.04.4 LTSRelated Jetstream resources:
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| Bioacoustic Data Collection Cloud Image Indiana University (Indiana U) Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website. Interacts with Frog Call Analysis image to get predictions from Random Forest ClassifierRelated Jetstream resources:
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| bgRAMOSE - Genomics Software Cloud Image Indiana University (Indiana U) This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:
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| vjc-r-devel-bbsinit Cloud Image Indiana University (Indiana U) r-devel of 2 july, with some bbs infrastructureRelated Jetstream resources:
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| Mining SRA to identify dataset Cloud Image Indiana University (Indiana U) This image walks through the steps to search the SRA using the SearhSRA gateway, and set of steps for filtering and visualizing the output generated. This is workflow developed by NCGAS and Rob Edwards with CEWiT REU students. For more information on the developed workflow, the information is available here https://github.com/NCGAS/CEWiT-REU-Identifying-datasets-in-SRA-using-JetstreamRelated Jetstream resources:
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| Ubuntu 18 Publishing Test Cloud Image Indiana University (Indiana U) Created from the updated Ubuntu 18.04 Jetstream image. For the purpose of testing the ability to run published Ubuntu images in AWS and VirtualBox. DOI: 10.5967/3xzc-2p36.Related Jetstream resources:
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| Summer REU Updated Image Cloud Image Indiana University (Indiana U) Added R, imagemagick, boxplot of random numbers for a weekend exercise.Related Jetstream resources:
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| Tims VM 25 March Cloud Image Indiana University (Indiana U) Backup Image for 25 MarchRelated Jetstream resources:
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| RDC MySQL Cloud Image Indiana University (Indiana U) RDC MySQL VM. NO GUI Image. CentOS 7. Based on featured Centos 7 development GUI image.Related Jetstream resources:
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| agavewrkshp20180806 Cloud Image Indiana University (Indiana U) This is a image with Docker and Singularity that works with the UH HPC for use in a Agave and Containers workshop hosted at UH.Related Jetstream resources:
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| MEGAN Community Edition v6 Cloud Image Indiana University (Indiana U) MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. For more information https://ab.inf.uni-tuebingen.de/software/megan6 This instance hosts the MEGAN v6 community edition softwareRelated Jetstream resources:
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| ariella_worker_6 Cloud Image Indiana University (Indiana U) worker for simulationsRelated Jetstream resources:
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| VirusFriends Cloud Image Indiana University (Indiana U) Version 1.0 of the Virus Friends imageRelated Jetstream resources:
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| SearchSRA Base Image Cloud Image Indiana University (Indiana U) A base installation of the tools to download sequences and search the Sequence Read Archive using either bowtie2 or RAPsearch2Related Jetstream resources:
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| Indiana Jetstream2 Research Computing Indiana University (Indiana U) Indiana Jetstream2 (jetstream2.indiana.xsede.org) provided by the Indiana University |
| XCI Usage Visualization and Analysis Service Online Service Indiana University (Indiana U) The Usage Visualization and Analysis Service based on the Grafana software enables XSEDE staff to view important usage metrics for 12 instrumented components, including CILogon, Globus Auth, Globus Transfer, SSO Hub, RDR, Research Software Portal, XDCDB APIs, Information Services APIs, and software downloads. Some of the important usage metrics include: number of times components were accessed, which users accessed components, distinct users per time period, and which clients accessed components. For the Globus Transfer service we have ~10 years of XSEDE usage data, while for most other components we have ~4 years worth of usage data.
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| Ubuntu 20.4 with Spark Cloud Image Indiana University (Indiana U) Ubuntu 20.04 with Anaconda3, Jupyter-notebook, Java11.0.13, Apache Spark 3.2, and pyspark. The Python environment includes matplotlib, pyspark, pandas, etc.Related Jetstream resources:
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| I520-B544-Lab Cloud Image Indiana University (Indiana U) Designed for use with IU SICE B544/I520 Security for Networked Systems (previously https://use.jetstream-cloud.org/application/images/754 by DongInn Kim and Dr. Raquel Hill)Related Jetstream resources:
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| Murdock-PIS- BLAST and Beyond Cloud Image Indiana University (Indiana U) BLAST+, Centrifuge and SRATools pre loaded and moved to /usr/lib/Related Jetstream resources:
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| EDGE_covid19 Cloud Image Indiana University (Indiana U) Base image for edge-covid19 siteRelated Jetstream resources:
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| A-State Phylogenetics Cloud Image Indiana University (Indiana U) VM designed for BIO 404V/504V - Phylogenetics and Systematics at Arkansas State University.Related Jetstream resources:
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| QIIME2 toolkit Cloud Image Indiana University (Indiana U) Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data. Documentation- http://merenlab.org/software/anvio/ This image was made by National Center for Genome Analysis Support (NCGAS)- ncgas.org. Please see our blog for documentation to use this image. If you have any questions regarding this image email us at help@ncgas.orgRelated Jetstream resources:
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| NCHS nanopore analysis tools Cloud Image Indiana University (Indiana U) flye quast medaka filtlong racon also updated cmake to v3.2, installed python3Related Jetstream resources:
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