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fftw Executable Software University of Delaware (UD)
fftw Version 3.3.9:gcc-10.1.0
netcdf-fortran Executable Software University of Delaware (UD)
netcdf-fortran Version 4.5.3
netcdf-cxx4 Executable Software University of Delaware (UD)
netcdf-cxx4 Version 4.3.1:intel-2020
cuda Executable Software University of Delaware (UD)
cuda Version 11.1.1
nvidia-hpc-sdk Executable Software University of Delaware (UD)
nvidia-hpc-sdk Version 2021.219
Pyspark-Ubuntu18.04-instance Cloud Image Indiana University (Indiana U)

This image has python3, java8, scala, spark3, hadoop and jupyter notebook pre-installed for I535 AssignmentRelated Jetstream resources:

Qiime2 toolkit Cloud Image Indiana University (Indiana U)

QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.Related Jetstream resources:

IU-BL-I535-MGMT-DATA Cloud Image Indiana University (Indiana U)

This is a VM for IU Bloomington class INFO I535 - Management, Access and Uses of Big Data.Related Jetstream resources:

PonyLinux Cloud Image Indiana University (Indiana U)

This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.

If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developerutilities/jetstreamboot.shRelated Jetstream resources:

DoaneBIO316_2020 Cloud Image Indiana University (Indiana U)

Ubuntu 18.04 LTS + Xfce desktop, Anaconda Python 3.7, BiopythonRelated Jetstream resources:

Frog Call Analysis Cloud Image Indiana University (Indiana U)

HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentationRelated Jetstream resources:

Frog Call Analysis Secure Cloud Image Indiana University (Indiana U)

HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.Related Jetstream resources:

System Message: WARNING/2 (<string>, line 1); backlink

Inline strong start-string without end-string.

System Message: WARNING/2 (<string>, line 1); backlink

Inline strong start-string without end-string.

System Message: WARNING/2 (<string>, line 1); backlink

Inline emphasis start-string without end-string.
Bioacoustic Data Collection Cloud Image Indiana University (Indiana U)

Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.Related Jetstream resources:

bgRAMOSE - Genomics Software Cloud Image Indiana University (Indiana U)

This image provides a platform for Brendel Group RAMOSE workflows for computational genomics.

Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:

REUexercise1 Cloud Image Indiana University (Indiana U)

This was an exercise for the REU Jetstream programRelated Jetstream resources:

openmrs-base Cloud Image Indiana University (Indiana U)

The base OpenMRS image for the CICI DynaSWAP projectRelated Jetstream resources:

Ubuntu 18.04 for SOMOSPIE Cloud Image Indiana University (Indiana U)

Apache Spark, Java, and various Python and R libraries pre-installed for SOMOSPIE (arXiv:1904.07754 [cs.LG]).Related Jetstream resources:

Ubuntu 18.04 with Spark Cloud Image Indiana University (Indiana U)

Ubuntu 18.04 with: Jupyter Notebook installed via ezj; Java 8 and Apache Spark installed in /usr/local; findspark, matplotlib, and pyspark installed with conda.

Built on Ubuntu 18.04 Devel and Docker v1.13 (by jfischer).Related Jetstream resources:

vjc_ub1804_with_ezj_rstudio Cloud Image Indiana University (Indiana U)

adds ezj and rstudio server to ubuntu 18.04 with dockerRelated Jetstream resources:

WQmaker 2.31.9 with BUSCO Cloud Image Indiana University (Indiana U)

Updated version of: maker 2.31.9 with CC tools v3.1. This image also contains BUSCO and hhmer to train AugustusRelated Jetstream resources:

PonyLinux Cloud Image Indiana University (Indiana U)

This image comes packed with a little game for learning Unix the fun way! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.Related Jetstream resources:

Ubuntu Docker and Gsissh Cloud Image Indiana University (Indiana U)

This image has Docker and gsissh installedRelated Jetstream resources:

Base for Automated Frog ID Cloud Image Indiana University (Indiana U)

This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devicesRelated Jetstream resources:

Ciliates Popupjb Cloud Image Indiana University (Indiana U)

Current Iteration of JBrowse image end of april 2019Related Jetstream resources:

REU Project Cloud Image Indiana University (Indiana U)

Friday 8 March 2019Related Jetstream resources:


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