Research Tools and Services Discovery
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| CTD² Data Portal Online Service CTD2 bridges the gap between the enormous volumes of data generated by genomic characterization studies and the ability to use these data for the development of human cancer therapeutics. It specializes in computational and functional genomics approaches critical for translating next-generation sequencing data, as well as high-throughput and high content small molecule and genetic screens. Associated Institutions:Office of Cancer Genomics National Cancer Institute Related Science Gateway resources:
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| iNquiry Online Service The iNquiry is a BioTeam production. BioTeam is a high-performance consulting practice. We are dedicated to delivering objective, technology agnostic solutions to life science researchers. We leverage the right technologies customized to our clients unique needs in order to enable them to reach their scientific objectives. Associated Institutions:Cneter for Comparative Genomics PhyloCluster,The BioTeam, Inc. Related Science Gateway resources:
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| University-National Oceanographic Laboratory System (UNOLS) Online Service University-National Oceanographic Laboratory System (UNOLS) is an organization of 58 academic institutions and National Laboratories involved in oceanographic research and joined for the purpose of coordinating oceanographic ships' schedules and research facilities. Associated Institutions:University of Rhode Island Related Science Gateway resources:
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| European Variation Archive (EVA) Online Service The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species. Associated Institutions:European Bioinformatics Institute (EMBL-EBI) Related Science Gateway resources:
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| DataCenterHub Online Service This hub allows for the organization, preservation, and sharing of scientific and engineering data. Related Science Gateway resources:
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| LIS - Legume Information System Online Service LIS is a collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species. Associated Institutions:National Center for Genome Resources (NCGR),USDA-ARS-CICGRU,Iowa State University Related Science Gateway resources:
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| ens@t registry Online Service ENS@T - the European Network for the Study of Adrenal Tumors - is a European consortium, founded to investigate rare adrenal tumors. Associated Institutions:Melbourne eResearch Group,University of Melbourne Related Science Gateway resources:
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| GenBank Online Service GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. GenBank is part of the International Nucleotide Sequence Database Collaboration , which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive (ENA), and GenBank at NCBI. These three organizations exchange data on a daily basis. Related Science Gateway resources:
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| Registry of Research data Repositories (re3data) Online Service re3data.org is a global registry of research data repositories that covers research data repositories from different academic disciplines. It presents repositories for the permanent storage and access of data sets to researchers, funding bodies, publishers and scholarly institutions. re3data.org promotes a culture of sharing, increased access and better visibility of research data. Associated Institutions:re3data.org Related Science Gateway resources:
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| ArcticConnect Online Service ArcticConnect is a network-enabled platform for realizing geospatial referencing of information about the arctic system derived from research, education, and private sector activities in the arctic and subarctic. Associated Institutions:Univdersity of Calgary Related Science Gateway resources:
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| All-Sky Virtual Observatory Online Service ASVO provides a direct and vital link between the theoretical and observational aspects of data collection and analysis. It enables researchers to access a growing collection of theoretical and observational datasets, via a distributed network of ASVO “Nodes”. Related Science Gateway resources:
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| Wheat3BMine Online Service Wheat3BMine is a data warehouse dedicated to wheat 3B chromosome. It is developed using InterMine technology, providing a fast, flexible and user friendly access to integrated data by multiple ways: a browser, a query builder and a region search tool. Wheat3BMine users can filter their favorite features, save their own queries, and export results under many formats (GFF3, BED or XML). An online documentation and pre-computed queries are also available. Associated Institutions:INRA - URGI, Versailles, France Related Science Gateway resources:
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| Marine Virtual Laboratory (MARVL) Online Service MARVL enables researchers interested in marine modelling access to an online portal that simplifies the process of marine modelling. It allows researchers to obtain a pre-prepared package using simple workflow by combining geographic location, datasets, forcing data and processing power, all within the cloud. Related Science Gateway resources:
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| Women Writing and Reading in Canada from 1950 (CanWWR) Online Service This site documents and reports on the development of a research project, Women Writing and Reading in Canada from 1950. It personalizes literary history as it explores the bond between reader and writer, world and text. Associated Institutions:University of Alberta Related Science Gateway resources:
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| Yeastract Online Service YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of approximately 163000 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1600 bibliographic references. It also includes the description of 268 specific DNA binding sites shared among 118 characterized TFs. Further information about each Yeast gene has been extracted from the Saccharomyces Genome Database (SGD) as per the latest release, revision 37942, from Jan 14, 2017. YEASTRACT provides a set of queries to search and retrieve important biological information from the gathered data and to predict transcription regulation networks in yeast from data emerging from gene-by-gene analysis or global approaches. Related Science Gateway resources:
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| Apache Airavata Online Service Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds. Related Science Gateway resources:
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| Expression Atlas Online Service Expression Atlas is an open science resource that gives users a powerful way to find information about gene and protein expression across species and biological conditions such as different tissues, cell types, developmental stages and diseases among others. Expression Atlas aims to help answering questions such as ‘where is a certain gene expressed?’ or ‘how does its expression change in a disease?’ Related Science Gateway resources:
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| ChEMBL Online Service ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data). The data is abstracted and curated from the primary scientific literature, and cover a significant fraction of the SAR and discovery of modern drugs. Associated Institutions:European Bioinformatics Institute Related Science Gateway resources:
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| OSiRIS - Open Storage Research Infrastructure Online Service OSiRIS has storage resources at Wayne State University, Michigan State University, and University of Michigan. We can store data spread across all three sites or target storage resources at a subset of the sites. The end goal is that researchers have a readily available storage infrastructure performant enough to compute and collaborate on data in-place. Our 4th collaborator, Indiana University, focuses on network management. Associated Institutions:University of Michigan,Michigan State University,Wayne State University,Indiana University, Bloomington Related Science Gateway resources:
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| CAVER Online Service CAVER is a software tool for analysis and visualization of tunnels and channels in protein structures. CAVER provides rapid, accurate and fully automated calculation of tunnels and channels in static and dynamic structures. The molecules amendable to analysis of CAVER include proteins, nucleic acids, or inorganic materials. Related Science Gateway resources:
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| PGA Online Service The PGA is the reference implementation portal for the Apache Airavata project. It provides simple access to several applications running on XSEDE. The PGA is the reference implementation portal for the Apache Airavata project. It provides simple access to several applications running on XSEDE. Associated Institutions:IUB Related Science Gateway resources:
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| XSEDE Globus Connect Server Globus usage reports incoming on XSEDE XCI Metrics Online Service Incoming Globus usage reports on XSEDE XCI Metrics |
| XSEDE Globus Connect Server ACCESS UD DARWIN Online Service Collection for ACCESS users to access data on DARWIN |
| VFX Techniques: Crowd Replication with After Effects Training Lynda.com VFX Techniques introduces common yet critical visual effects techniques that are used in film and television shows on a regular basis. This installment shows how to simulate a large crowd by combining live-action footage of a small group of people, 3D renders, and Adobe Photoshop artwork—transforming an otherwise empty building into a rapt audience. Author Lee Lanier uses After Effects to set up image sequences, apply motion tracking to match the motion of the original camera, and key green-screen footage. Finally, you'll learn how to make all the elements cohesive with color correction and lighting techniques. |
| Biostatistical Services Consulting and Support In response to the needs of investigators, IHSI offers high-quality biostatistical consulting and analysis services in support of biomedical, clinical, and health research. |
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