Research Resource Discovery

Set default python to python 3 and installed pandas, pyspark, matplotlib, pymongo etc

version 2.0

Ubuntu 16.04 featured image + Jupyter + IHaskell Source: https://github.com/gibiansky/IHaskell

Imported Application - Image1

Imported Application - Image With NAMD TEST

**Intel compilers and development environment** ***REQUIRES a m1.small or larger VM to launch*** Based on Centos 7 (7.8), Intel(R) Parallel Studio + GUI + iRODs access added Installation size ~ 18 GB

InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains

Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads (https://github.com/PacificBiosciences/IsoSeq3)

Imported Application - IUNI GUILD 2

Imported Application - IUNI-GUILD Database

root@js-17-95:~# history | grep apt 20 apt install linux-tools-common 22 apt install linux-cloud-tools-generic 24 apt install linux-tools-generic 31 apt install linux-tools-4.15.0-32-generic 37 apt install hwloc Mainly to get 'perf' work.

Imported Application - JBrowse_and_Dokuwiki_with_SSL_October13_2017

Cloud-based and on-demand computation, experimentation, and teaching platform.

Imported Application - jlf-centos8-initial-import

Imported Application - jlf-ubuntu20-initial-import

Installed packages and dependencies for assembling bacterial genomes and loading into Anvio.

Image for the JPL-SAGAn 2020 workshop, focused on genome assembly. Includes conda, jupyter, jupyterlab, fastqc, bbmap, spades, checkm, bit, and GToTree.

image for the 2020 JPL SAGAn workshop. includes conda, jupyter, spades, megahit, trimmomatic, fastqc

Image for the JPL-SAGAn 2020 workshop, focused on genome assembly. Includes conda, jupyter, jupyterlab, fastqc, bbmap, spades, megahit, quast, and checkm.

Image for the JPL-SAGAn 2020 workshop, focused on genome assembly. Includes conda, jupyter, jupyterlab, fastqc, bbmap, spades, checkm, bit, and GToTree.

Conda, jupyter lab, R, Rstudio-server. Image is designed for an internship program performing metagenomic read classification.

Imported Application - JS-API-Featured-CentOS7-Latest

Imported Application - JSU-Training-May2017

Julia v0.6.4 built on Ubuntu 18.04 LTS Development + GUI support + Docker. Minimal build. Notice that v0.6 is now deprecated. Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Will run on m1.tiny but cannot accommodate too much else. No packages installed. Default package directory is ~/.julia/v0.6 and thus specific to the instance. Installation folder: /usr/local/bin/

Julia v0.7.0 built on Ubuntu 18.04 LTS Development + GUI support + Docker. Minimal build. Notice that v0.7 is now deprecated. Primarily used to convert code between v0.6.* and v1.0.0 Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added No packages installed. Default package directory is ~/.julia/v0.6 and thus specific to the instance. Installation folder: /usr/local/bin/