Research Resource Discovery

Julia v1.2.0 built on Ubuntu 18.04 Devel and Docker. Minimal build. Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added No packages installed. Default package directory is ~/.julia and thus specific to the instance. Installation folder: /usr/local/ with symbolic link /usr/local/bin which is on the system path.

Minimal Image for SWC

Jupyterhub server with Python 2 and 3 kernels. Neuron software and its python interpreter to run the Neuron simulations with python code.

Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.

Updated Ubuntu on image

Ubuntu 18.04 image for spike sorting updated till Oct 19, 2018. Added: anaconda path to /etc/bash.bashrc

Imported Application - Knox assemblies

Imported Application - lappsgrid-proxy-initial

Imported Application - Maize WQ_MAKER 2.31.8

this image is update of MAKER_1154_and_Friends v1.1 Updates include- addition of java libraries

This image is intended for Genome annotation using MAKER using cctools (WQ-MAKER)

BLAT and Genemark installed in WQ-MAKER image

THis is a updated of image MAKER_1154_and_Friends update

Matlab R2017A Docker Ubuntu 18.04.4 LTS

Contains MATLAB 2017a as well as Docker; based on Ubuntu 16.04. Already configured to use JetStream MATLAB licenses.

Matlab R2018a with Update 6 built on Ubuntu 18.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 15 GB -- **requires m1.small or larger** Installation folder: /opt/MATLAB/R2018a Products: MATLAB Bioinformatics Toolbox 4.10 Curve Fitting Toolbox 3.5.7 Database Toolbox 8.1 Econometrics Toolbox 5.0 Financial Toolbox 5.11 Global Optimization Toolbox 3.4.4 Image Processing Toolbox 10.2 Neural Network Toolbox 11.1 Optimization Toolbox 8.1 Parallel Computing Toolbox 6.12 Partial Differential Equation Toolbox 3.0 Statistics and Machine Learning Toolbox 11.3 Symbolic Math Toolbox 8.1 SimuLink is NOT installed!

Updated from Matlab Minumum with SPM12, Conn, xjview, fmriprep image for neuroimaging researchers, also autoppc pipeline specifically for DCNL group.

Matlab R2019a install - requires an **m1.medium** or larger Based on Ubuntu 16.04 LTS Development + GUI support + Docker Installation size ~ 36GB Licensed for: Standard Suite (MATLAB and Simulink) AUTOSAR Blockset Antenna Toolbox Bioinformatics Toolbox Communications Toolbox Control System Toolbox Curve Fitting Toolbox DSP System Toolbox Database Toolbox Datafeed Toolbox Deep Learning Toolbox Econometrics Toolbox Embedded Coder Filter Design HDL Coder Financial Instruments Toolbox Financial Toolbox Fixed-Point Designer Fuzzy Logic Toolbox GPU Coder Global Optimization Toolbox HDL Coder HDL Verifier Image Acquisition Toolbox Image Processing Toolbox Instrument Control Toolbox LTE HDL Toolbox LTE Toolbox MATLAB Coder MATLAB Compiler MATLAB Compiler SDK MATLAB Report Generator Mapping Toolbox Mixed-Signal Blockset Model Predictive Control Toolbox Optimization Toolbox Parallel Computing Toolbox Partial Differential Equation Toolbox Phased Array System Toolbox Powertrain Blockset Predictive Maintenance Toolbox Reinforcement Learning Toolbox Risk Management Toolbox Robotics System Toolbox Robust Control Toolbox Sensor Fusion and Tracking Toolbox SerDes Toolbox Signal Processing Toolbox SimBiology SimEvents Simscape Simscape Driveline Simscape Electrical Simscape Fluids Simscape Multibody Simulink 3D Animation Simulink Check Simulink Code Inspector Simulink Coder Simulink Control Design Simulink Coverage Simulink Design Optimization Simulink Design Verifier Simulink Report Generator Simulink Requirements Simulink Test SoC Blockset Stateflow Statistics and Machine Learning Toolbox Symbolic Math Toolbox System Composer System Identification Toolbox Text Analytics Toolbox Trading Toolbox Vision HDL Toolbox Wavelet Toolbox

MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. For more information https://ab.inf.uni-tuebingen.de/software/megan6 This instance hosts the MEGAN v6 community edition software

Pulled microservies from Docker hub

This image walks through the steps to search the SRA using the SearhSRA gateway, and set of steps for filtering and visualizing the output generated. This is workflow developed by NCGAS and Rob Edwards with CEWiT REU students. For more information on the developed workflow, the information is available here https://github.com/NCGAS/CEWiT-REU-Identifying-datasets-in-SRA-using-Jetstream

installed mongodb in order to use it in our website

MongoDB and Node.js on CentOS 7.4 for NoSQL database and back-end service.

mongoDB_nodeJS_test_tiny This will be used for db performance trainer..

Ubuntu devel + docker, with conda, Jupyter Notebook, and RStudio Server installed, with tidyverse, DESeq2, and tximport.