Research Resource Discovery

Imported Application - perfSONAR Toolkit 3.5.1

Imported Application - perfSONAR Toolkit 3.5.1

Imported Application - perfSONAR-Toolkit-3.5.1

Centos7 GUI development with Agisoft's photoscan preinstalled and configured

To run larger datasets on Photoscan

Using Photoscan for REU Project

Imported Application - pna-agent

Anaconda python 3.6, OpenMM

A fun game-based way to learn your way around the command line in Unix.

This image comes packed with a little game for learning Unix the fun way! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.

This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developer_utilities/jetstream_boot.sh

Practice

Imported Application - project a

Imported Application - psaha4-ubuntu 14.04 Apache2

Imported Application - psaha4-ubuntu 14.04 Apache2 mesos

Imported Application - psaha4 ubuntu 14.04 GUI

Imported Application - pS-Toolkit-4.0-CentOS7

Imported Application - pS-Toolkit-4.0-CentOS7-NetInstall-x86_64-2017Apr21.iso

Imported Application - Python3_Jupyter_Tensorflow

Imported Application - QGIS 2.18.1

QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.

Imported Application - R4assayHTS

This VM has RStudio Server installed along with R 3.6, bioconductor 3.9, and many pre-loaded packages for doing RADseq analysis, including BEAST, VCFTools, and bioconductor packages for filtering vcfs, building phylogenetic trees, and mapping traits to those trees.

R, R Studio, and Shiny Server with GCC Shiny port is 3838 - /srv/shiny-server is the data directory Installation size ~ 7.3GB --> an m1.small is now required for proper operation and deployment

RDC MySQL VM. NO GUI Image. CentOS 7. Based on featured Centos 7 development GUI image.