Training Discovery

With the support of the OVCR, HPCBio is offering a new workshop titled Advanced R: Variant Analysis to be held on December 2nd & 4th from 1-3pm each day. Through hands-on exercises and lecture over Zoom, attendees will learn how to read, filter, and interrogate variant calls that are in VCF (Variant Call Format) format with Bioconductor packages in R. Knowledge of basic R programming is required to take this workshop. If needed, please see the FAQ on the registration page below for alternative ways to fulfill the pre-requisites.

With the support of the OVCR, HPCBio will teach a 2-part workshop, held on December 2nd & 4th from 1-3pm each day. Attendees will learn how to read, filter, and interrogate variant calls that are in VCF (Variant Call Format) format with Bioconductor packages in R. Analyses may include some or all of the following topics: assessing minor allele frequency, missing data rate, heterozygosity, and/or linkage disequilibrium; working with genome annotations as TxDb objects; discovering what genes are near SNPs of interest; identifying functional consequences of variants.

Hosted & taught by High-Performance Biological Computing (HPCBio) with the support of the OVCR. CNRG (Computer Network Resource Group) instructs Biocluster session. 

Hosted & taught by High-Performance Biological Computing (HPCBio) with the support of the OVCR. CNRG (Computer Network Resource Group) instructs Biocluster session. 

Hosted & taught by High-Performance Biological Computing (HPCBio) with the support of the OVCR. CNRG (Computer Network Resource Group) instructs Biocluster session. 

Hosted & taught by High-Performance Biological Computing (HPCBio) with the support of the OVCR. CNRG (Computer Network Resource Group) instructs Biocluster session.