XSEDE Software Discovery
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| vjc_ub1804_with_ezj_rstudio Cloud Image Indiana U adds ezj and rstudio server to ubuntu 18.04 with dockerRelated Jetstream resources:
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| WQmaker 2.31.9 with BUSCO Cloud Image Indiana U Updated version of: maker 2.31.9 with CC tools v3.1. This image also contains BUSCO and hhmer to train AugustusRelated Jetstream resources:
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| PonyLinux Cloud Image Indiana U This image comes packed with a little game for learning Unix the fun way! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.Related Jetstream resources:
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| Ubuntu Docker and Gsissh Cloud Image Indiana U This image has Docker and gsissh installedRelated Jetstream resources:
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| Base for Automated Frog ID Cloud Image Indiana U This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devicesRelated Jetstream resources:
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| Ciliates Popupjb Cloud Image Indiana U Current Iteration of JBrowse image end of april 2019Related Jetstream resources:
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| PonyLinux Cloud Image Indiana U This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developerutilities/jetstreamboot.shRelated Jetstream resources:
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| REU Project Cloud Image Indiana U Friday 8 March 2019Related Jetstream resources:
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| EPIC Modeling and Simulations Cloud Image Indiana U Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model Based on Ubuntu 14.04.3 Development Patched up to date as of 1/2/17 Base Ubuntu 14.04.3 + Xfce + Xfce-goodies, firefox, icon sets and themes EPIC 3v9Related Jetstream resources:
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| EDGE_v1 Cloud Image Indiana U EDGE bioinformatics websiteRelated Jetstream resources:
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| Photoscan_Centos7 Cloud Image Indiana U Centos7 GUI development with Agisoft's photoscan preinstalled and configuredRelated Jetstream resources:
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| InterProScan-5.30-69.0 Cloud Image Indiana U InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it containsRelated Jetstream resources:
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| DIBSI 2018 workshop image Cloud Image Indiana U Based on Ubuntu 18.04 devel and docker, with bioconda added.Related Jetstream resources:
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| bcbio-nextgen Cloud Image Indiana U Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.Related Jetstream resources:
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| VJC_R341_Bioc3_6_HSOS_admDec28 Cloud Image Indiana U updates Bioc packages and includes HSOS infrastructure of Dec 2017Related Jetstream resources:
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| pna-agent-tacc Cloud Image Indiana U Anaconda python 3.6, OpenMMRelated Jetstream resources:
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| MAKER 2.31.9 with CCTools v3.1 Cloud Image Indiana U This image is intended for Genome annotation using MAKER using cctools (WQ-MAKER)Related Jetstream resources:
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| VJC_R3_4_1_BiocHSOS_HDFS v_1_1 Cloud Image Indiana U Adding infrastructure to support running hdf server.Related Jetstream resources:
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| VJC_R3.4.1_BiocHSOS v.1.1 Cloud Image Indiana U Includes sufficient infrastructure to run rhdf5client + HSOSRelated Jetstream resources:
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| VJC_R3.4.1_Bioconductor Cloud Image Indiana U Includes sufficient infrastructure to run rhdf5clientRelated Jetstream resources:
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| Ubuntu 14.04.3 - Phylogenetics Cloud Image Indiana U Common packages for phylogenetics, population genetics, and phylogeography. Type "module avail" to view installed modules.Related Jetstream resources:
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| Globus Toolkit GridFTP Service Vendor Software Globus Toolkit GridFTP Services
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| Information Services Vendor Software XSEDE XSEDE Information Services (IS)
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| Genesis II Vendor Software Genesis II distributed computing platform
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| Kerberos Vendor Software Kerberos is a network authentication protocol. It is designed to provide strong authentication for client/server applications by using secret-key cryptography. A free implementation of this protocol is available from the Massachusetts Institute of Technology. Kerberos is available in many commercial products as well.
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