XSEDE Software Discovery
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| Ubuntu Docker and Gsissh Cloud Image IU-PTI This image has Docker and gsissh installed Related Jetstream resources:
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| Base for Automated Frog ID Cloud Image IU-PTI This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devices Related Jetstream resources:
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| Doane CST210 Ubuntu Cloud Image IU-PTI Ubuntu 18.04 LTS + Xfce desktop, Anaconda Python 3.7 Related Jetstream resources:
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| Ciliates Popupjb Cloud Image IU-PTI Current Iteration of JBrowse image end of april 2019 Related Jetstream resources:
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| REU Project Cloud Image IU-PTI Friday 8 March 2019 Related Jetstream resources:
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| EPIC Modeling and Simulations Cloud Image IU-PTI Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model Based on Ubuntu 14.04.3 Development Patched up to date as of 1/2/17 Base Ubuntu 14.04.3 + Xfce + Xfce-goodies, firefox, icon sets and themes EPIC 3v9 Related Jetstream resources:
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| EDGE_v1 Cloud Image IU-PTI EDGE bioinformatics website Related Jetstream resources:
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| Photoscan_Centos7 Cloud Image IU-PTI Centos7 GUI development with Agisoft's photoscan preinstalled and configured Related Jetstream resources:
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| InterProScan-5.30-69.0 Cloud Image IU-PTI InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains Related Jetstream resources:
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| DIBSI 2018 workshop image Cloud Image IU-PTI Based on Ubuntu 18.04 devel and docker, with bioconda added. Related Jetstream resources:
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| bcbio-nextgen Cloud Image IU-PTI Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology. Related Jetstream resources:
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| VJC_R341_Bioc3_6_HSOS_admDec28 Cloud Image IU-PTI updates Bioc packages and includes HSOS infrastructure of Dec 2017 Related Jetstream resources:
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| pna-agent-tacc Cloud Image IU-PTI Anaconda python 3.6, OpenMM Related Jetstream resources:
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| MAKER 2.31.9 with CCTools v3.1 Cloud Image IU-PTI This image is intended for Genome annotation using MAKER using cctools (WQ-MAKER) Related Jetstream resources:
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| VJC_R3_4_1_BiocHSOS_HDFS v_1_1 Cloud Image IU-PTI Adding infrastructure to support running hdf server. Related Jetstream resources:
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| VJC_R3.4.1_BiocHSOS v.1.1 Cloud Image IU-PTI Includes sufficient infrastructure to run rhdf5client + HSOS Related Jetstream resources:
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| VJC_R3.4.1_Bioconductor Cloud Image IU-PTI Includes sufficient infrastructure to run rhdf5client Related Jetstream resources:
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| Ubuntu 14.04.3 - Phylogenetics Cloud Image IU-PTI Common packages for phylogenetics, population genetics, and phylogeography. Type "module avail" to view installed modules. Related Jetstream resources:
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| Globus Toolkit GridFTP Service Vendor Software Globus Toolkit GridFTP Services
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| Information Services Vendor Software XSEDE XSEDE Information Services (IS)
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| Genesis II Vendor Software Genesis II distributed computing platform
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| Kerberos Vendor Software Kerberos is a network authentication protocol. It is designed to provide strong authentication for client/server applications by using secret-key cryptography. A free implementation of this protocol is available from the Massachusetts Institute of Technology. Kerberos is available in many commercial products as well.
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| MyProxy Vendor Software NCSA MyProxy is open source software for managing X.509 Public Key Infrastructure (PKI) security credentials (certificates and private keys). MyProxy combines an online credential repository with an online certificate authority to allow users to securely obtain credentials when and where needed. Users run myproxy-logon to authenticate and obtain credentials, including trusted CA certificates and Certificate Revocation Lists (CRLs). Storing credentials in a MyProxy repository allows users to easily obtain RFC 3820 proxy credentials, without worrying about managing private key and certificate files. They can use MyProxy to delegate credentials to services acting on their behalf (like a grid portal) by storing credentials in the MyProxy repository and sending the MyProxy passphrase to the service. They can also use MyProxy to renew their credentials, so, for example, long-running jobs don't fail because of expired credentials. A professionally managed MyProxy server can provide a more secure storage location for private keys than typical end-user systems. MyProxy can be configured to encrypt all private keys in the repository with user-chosen passphrases, with server-enforced policies for passphrase quality. By using a proxy credential delegation protocol, MyProxy allows users to obtain proxy credentials when needed without ever transferring private keys over the network. For users that don't already have PKI credentials, the MyProxy Certificate Authority (CA) provides a convenient method for obtaining them. The MyProxy CA issues short-lived session credentials to authenticated users. The repository and CA functionality can be combined in one service or can be used separately. MyProxy provides a set of flexible authentication and authorization mechanisms for controlling access to credentials. Server-wide policies allow the MyProxy administrator to control how credentials may be used. Per-credential policies provide additional controls for credential owners. MyProxy supports multiple authentication mechanisms, including passphrase, certificate, Kerberos, OAuth, SAML, OpenID, Pubcookie, VOMS, PAM, LDAP, RADIUS, SASL, Moonshot, and One Time Passwords (OTP).
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| Amber Vendor Software Molecular mechanical force fields for the simulation of biomolecules and package of molecular simulation programs
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| Globus Sharing Vendor Software Globus Data Sharing Service
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