XSEDE Software Discovery
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| netcdf-fortran Executable Software UD netcdf-fortran Version 4.5.3 |
| openmpi Executable Software UD openmpi Version 2.1.6 |
| Bioacoustic Data Collection Cloud Image Indiana U Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.Related Jetstream resources:
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| bgRAMOSE - Genomics Software Cloud Image Indiana U This image provides a platform for Brendel Group RAMOSE workflows for computational genomics. Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:
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| REUexercise1 Cloud Image Indiana U This was an exercise for the REU Jetstream programRelated Jetstream resources:
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| openmrs-base Cloud Image Indiana U The base OpenMRS image for the CICI DynaSWAP projectRelated Jetstream resources:
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| IU-BL-I535-MGMT-DATA Cloud Image Indiana U This VM has been created for INFO-I 535 Management, Access and Uses of Big Data course conducted in Spring 2021.Related Jetstream resources:
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| PonyLinux Cloud Image Indiana U This image comes packed with a fun game for learning your way around the command line in Unix! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files. If you want logins to work and full details, make sure you add this as a deployment script url: https://raw.githubusercontent.com/NCGAS/PonyLinux/master/Developerutilities/jetstreamboot.shRelated Jetstream resources:
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| DoaneBIO316_2020 Cloud Image Indiana U Ubuntu 18.04 LTS + Xfce desktop, Anaconda Python 3.7, BiopythonRelated Jetstream resources:
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| Frog Call Analysis Cloud Image Indiana U HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentationRelated Jetstream resources:
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| Pyspark-Ubuntu18.04-instance Cloud Image Indiana U This image has python3, java8, scala, spark3, hadoop and jupyter notebook pre-installed for I535 AssignmentRelated Jetstream resources:
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| Qiime2 toolkit Cloud Image Indiana U QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.Related Jetstream resources:
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| Frog Call Analysis Secure Cloud Image Indiana U HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.Related Jetstream resources:
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| Matlab Minimal Cloud Image Indiana U Matlab R2018a with Update 6 built on Ubuntu 18.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 15 GB -- requires m1.small or larger Installation folder: /opt/MATLAB/R2018a Products: MATLAB Bioinformatics Toolbox 4.10 Curve Fitting Toolbox 3.5.7 Database Toolbox 8.1 Econometrics Toolbox 5.0 Financial Toolbox 5.11 Global Optimization Toolbox 3.4.4 Image Processing Toolbox 10.2 Neural Network Toolbox 11.1 Optimization Toolbox 8.1 Parallel Computing Toolbox 6.12 Partial Differential Equation Toolbox 3.0 Statistics and Machine Learning Toolbox 11.3 Symbolic Math Toolbox 8.1 SimuLink is NOT installed!Related Jetstream resources:
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| Galaxy Standalone Cloud Image Indiana U Galaxy Server Standalone Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added Runs on port 8080 by default -- access as http://your_ip:8080 Installation size ~ 9.8 GB Requires an m1.medium or larger to run. Information on administering Galaxy may be found here: https://galaxyproject.org/admin/ Galaxy help is here: https://help.galaxyproject.org/ Galaxy dir is /opt/galaxy/galaxyRelated Jetstream resources:
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| Ubuntu 20.04 Devel and Docker Cloud Image Indiana U Ubuntu 20.04 LTS Development + GUI support + Docker Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added Installation size ~ 4.2 GBRelated Jetstream resources:
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| IU-BL-I535-MGMT-DATA Cloud Image Indiana U This is a VM for IU Bloomington class INFO I535 - Management, Access and Uses of Big Data.Related Jetstream resources:
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| REU Project Cloud Image Indiana U Friday 8 March 2019Related Jetstream resources:
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| EPIC Modeling and Simulations Cloud Image Indiana U Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model Based on Ubuntu 14.04.3 Development Patched up to date as of 1/2/17 Base Ubuntu 14.04.3 + Xfce + Xfce-goodies, firefox, icon sets and themes EPIC 3v9Related Jetstream resources:
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| EDGE_v1 Cloud Image Indiana U EDGE bioinformatics websiteRelated Jetstream resources:
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| Photoscan_Centos7 Cloud Image Indiana U Centos7 GUI development with Agisoft's photoscan preinstalled and configuredRelated Jetstream resources:
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| bcbio-nextgen Cloud Image Indiana U Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.Related Jetstream resources:
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| VJC_R341_Bioc3_6_HSOS_admDec28 Cloud Image Indiana U updates Bioc packages and includes HSOS infrastructure of Dec 2017Related Jetstream resources:
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| pna-agent-tacc Cloud Image Indiana U Anaconda python 3.6, OpenMMRelated Jetstream resources:
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| VJC_R3_4_1_BiocHSOS_HDFS v_1_1 Cloud Image Indiana U Adding infrastructure to support running hdf server.Related Jetstream resources:
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